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eRI Support Documentation
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eRI Support Documentation
GitHub
Getting Started
Getting Started
Accessing eRI
Accessing eRI
Creating an eRI Account
Adding Members to an eRI project
Choosing and Configuring Software for Connecting to the Clusters
Terminal Setup
bashrc Setup
Next Steps
Next Steps
Submitting your first job
Finding Job Efficiency
Getting Help
Getting Help
Weekly Online Office Hours
System status
Making a Helpful Support Request
Coldfront
Coldfront
Access to ColdFront
How do I Add a User?
How do I check my allocations
How do I Request a Resource?
Terminal Setup
Terminal Setup
Standard Terminal Setup
MobaXterm Setup (Windows)
VSCode
WinSCP/PuTTY Setup (Windows)
X11 on eRI
Using eRI
Using eRI
OpenOnDemand
OpenOnDemand
How to connect to Open OnDemand
Jupyter Kernels
Jupyter on eRI
RStudio
Virtual Desktop via Jupyter on NeSI
Running Jobs
Running Jobs
SLURM: Best Practice
SLURM Interactive Sessions
SLURM Partitions
Parallel Execution
Checksums
Job Scaling - Ascertaining job dimensions
MPI Scaling Example
Multithreading Scaling Example
Checking your project's usage using sreport
Supported Applications
Supported Applications
AlphaFold
BLAST
BRAKER
Clair3
Dorado
FlexiBLAS
GATK
Java
Julia
Keras
Lambda Stack
Miniconda3
Python
R
Singularity
TensorFlow on CPUs
TensorFlow on GPUs
Trinity
TurboVNC
VirSorter
How to run gquery
ipyrad
nix
ont-guppy-gpu
snpEff
File Systems & Data
File Systems & Data
File Transfer
eRI File Systems and Quotas
Scratch Autodelete
File Recovery
Globus Quick Start Guide
Initial Globus Sign-Up, and your Globus Identities
Help
Help
Cheatsheets
Cheatsheets
Bash: Reference Sheet
Git: Reference Sheet
Slurm: Reference Sheet
tmux: Reference sheet
FAQs
FAQs
How can I see how busy the cluster is?
Can I change my time zone to New Zealand time?
Converting from Windows-style to UNIX-style line endings
How do I fix my locale and language settings?
How do I run my Python Notebook through SLURM?
What are my .bashrc & .bash_profile for?
What does "oom-kill" mean?
What is a '.core' file?
Where should I store my data on NeSI systems?
Why can't I log in using MobaXTerm?
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