eRI Support Documentation
How do I check my allocations
Initializing search
GitHub
Contact Support
eRI Support Documentation
GitHub
Getting Started
Getting Started
Accessing eRI
Accessing eRI
Creating an eRI Account
Applying for a new NeSI project
Adding Members to an eRI project
Choosing and Configuring Software for Connecting to the Clusters
Port Forwarding
X-Forwarding using the Ubuntu Terminal on Windows
Next Steps
Next Steps
Submitting your first job
Finding Job Efficiency
Moving files to and from the cluster
Parallel Execution
Job Scaling - Ascertaining job dimensions
MPI Scaling Example
Multithreading Scaling Example
Getting Help
Getting Help
NeSI wide area network connectivity
Weekly Online Office Hours
System status
Making a Helpful Support Request
Coldfront
Coldfront
Access to ColdFront
How do I Add a User?
How do I check my allocations
How do I Request a Resource?
General
General
Announcements
Announcements
Announcement2
Announcement1
Cheatsheets
Cheatsheets
Bash: Reference Sheet
Git: Reference Sheet
Slurm: Reference Sheet
tmux: Reference sheet
FAQs
FAQs
How can I see how busy the cluster is?
Can I change my time zone to New Zealand time?
Can I use SSHFS to mount the cluster filesystem on my local machine?
Converting from Windows-style to UNIX-style line endings
How can I give read-only team members access to my files?
How can I let my fellow project team members read or write my files?
How do I fix my locale and language settings?
How do I request memory?
How do I run my Python Notebook through SLURM?
What are my .bashrc & .bash_profile for?
What does "oom-kill" mean?
What is a '.core' file?
What software environments on NeSI are optimised for Machine Learning and data science?
Where should I store my data on NeSI systems?
Why can't I log in using MobaXTerm?
Scientific Computing
Scientific Computing
Terminal Setup
Terminal Setup
Standard Terminal Setup
MobaXterm Setup (Windows)
VSCode
WinSCP/PuTTY Setup (Windows)
Windows Subsystem for Linux (WSL)
X11 on NeSI
OpenOnDemand
OpenOnDemand
Jupyter kernels - Manual management
Jupyter kernels - Tool-assisted management
Jupyter on NeSI
MATLAB via Jupyter on NeSI
RStudio via Jupyter on NeSI
Virtual Desktop via Jupyter on NeSI
Supported Applications
Supported Applications
AlphaFold
BLAST
BRAKER
Clair3
Dorado
FlexiBLAS
GATK
Java
Julia
Keras
Lambda Stack
Miniconda3
Python
R
Singularity
TensorFlow on CPUs
TensorFlow on GPUs
Trinity
TurboVNC
VirSorter
ipyrad
ont-guppy-gpu
snpEff
Running Jobs on eRI
Running Jobs on eRI
Checking your project's usage using nn_corehour_usage
Checksums
Fair Share
Fair Share -- How jobs get prioritised
GPU use on NeSI
Hyperthreading
Job Checkpointing
Job prioritisation
SLURM: Best Practice
Slurm Interactive Sessions
eRI Slurm Partitions
Storage
Storage
File Systems and Quotas
File Systems and Quotas
NeSI File Systems and Quotas
Automatic cleaning of nobackup file system
Data Compression
File permissions and groups
I/O Performance Considerations
Data Recovery
Data Recovery
File Recovery
Data Transfer Services
Data Transfer Services
Globus Quick Start Guide
Initial Globus Sign-Up, and your Globus Identities
National Data Transfer Platform
How do I check my allocations
Back to top
https://www.agresearch.co.nz/_resources/themes/agtheme/dist/static/svg/logo-ag-research-white.svg?m=1740082647